miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|212145276|gb|CU584463.1|CU584463 CGGGAATTGGAAACCGTCTTTCCTCCTTTGCTCTTCCTCCCCAAAAATAAAGGAGAAAAATGGATTTTACAAGGGTGTTA
CCGGAAGAGTGCTTGTGTCTGATCATATCATTGACGTCGCCTCGAGACGCATGTCGATCGGCCCTTGTTTCTCCTGCCAT
GAGATCAGTTGCAGACTCTGATGCTGTGTGGGAGAGGTTTCTGCCTTGTGATTATAAGGAAATCATTTCCGGGTCATCAT
CATCATCATCGTCGTTGCTTTCATTGCCAAAGAAGGATCTTTATTTTCGTCTCTCCCTTCATCCCCTTCTCCTTGAAAAT
GGTAGCAAGAGCTTTCAACTGGAGAAAGAGACTGGAAAAAAATGCTATATGTTAGGAGCAAGAGCGCTTTCAATTATATG
GGAAGATGAACCTGAGTATTGGGGGTGGACATCTATACCAGAGTCTAGGTTCTCTGAAGCTGCGAAGCTCGAGATAGTCT
GGTGGCTCGAGGTCAAGGGAAAGATTAAGACCAGAATTTTATCTTCCAGAACAAGCTATGCAGCATACCTTGTGTTTAAG
TTCGAT




Most similar to sp|Q9FLU7|P2B12_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis
           thaliana GN=PP2B12 PE=4 SV=1
          Length = 251

 Score =  171 bits (434), Expect = 2e-42
 Identities = 84/161 (52%), Positives = 105/161 (65%)
 Frame = +3

Query: 78  LPEECLCLIISLTSPRDACRSALVSPAMRSVADSDAVWERFLPCDYKEIIXXXXXXXXXX 257
           LPEEC+  +IS TSP DACR + VS  +RS ADS+  WERFLP DY+  I          
Sbjct: 6   LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFS-- 63

Query: 258 XXXPKKDLYFRLSLHPLLLENGSKSFQLEKETGKKCYMLGARALSIIWEDEPEYWGWTSI 437
                K L+ R    PLL+E+G  SF +EK +GKKC+ML AR L I+W D PE+W W SI
Sbjct: 64  ----NKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query: 438 PESRFSEAAKLEIVWWLEVKGKIKTRILSSRTSYAAYLVFK 560
           P+SRF E A L +V W E++GKI T +LS  T+Y+AYLVFK
Sbjct: 120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFK 160